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|00000000| 00 11 41 62 6f 75 74 20 | 53 61 6d 70 6c 65 20 44 |..About |Sample D|
|00000010| 61 74 61 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |ata.....|........|
|00000020| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000030| 00 00 00 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |........|........|
|00000040| 00 41 50 50 4c 4c 45 54 | 52 20 00 00 00 00 00 00 |.APPLLET|R ......|
|00000050| 00 00 00 00 00 12 ef 00 | 00 16 ac a5 05 66 20 a5 |........|.....f .|
|00000060| 05 66 2f 00 00 00 00 00 | 00 00 00 00 00 00 00 00 |.f/.....|........|
|00000070| 00 00 00 00 00 00 00 00 | 00 00 81 81 6f 15 00 00 |........|....o...|
|00000080| 44 4e 41 20 54 72 61 6e | 73 6c 61 74 6f 72 20 50 |DNA Tran|slator P|
|00000090| 61 63 6b 61 67 65 20 63 | 6f 6e 73 69 73 74 73 20 |ackage c|onsists |
|000000a0| 6f 66 20 74 68 65 20 66 | 6f 6c 6c 6f 77 69 6e 67 |of the f|ollowing|
|000000b0| 3a 0d 0d 44 4e 41 20 54 | 72 61 6e 73 6c 61 74 6f |:..DNA T|ranslato|
|000000c0| 72 20 5b 73 74 61 63 6b | 20 37 31 31 4b 5d 0d 41 |r [stack| 711K].A|
|000000d0| 6c 69 67 6e 65 72 20 5b | 73 74 61 63 6b 20 38 34 |ligner [|stack 84|
|000000e0| 4b 5d 0d 44 4e 41 20 54 | 72 61 6e 73 6c 61 74 6f |K].DNA T|ranslato|
|000000f0| 72 20 49 6e 74 72 6f 20 | 5b 68 65 6c 70 20 74 65 |r Intro |[help te|
|00000100| 78 74 20 31 38 4b 5d 0d | 53 61 6d 70 6c 65 20 49 |xt 18K].|Sample I|
|00000110| 6e 70 75 74 2f 4f 75 74 | 70 75 74 20 5b 66 6f 6c |nput/Out|put [fol|
|00000120| 64 65 72 5d 0d 20 20 20 | 31 32 53 20 72 52 4e 41 |der].   |12S rRNA|
|00000130| 20 5b 66 6f 6c 64 65 72 | 5d 0d 20 20 20 20 20 20 | [folder|].      |
|00000140| 53 61 6d 70 6c 65 73 20 | 74 6f 20 69 6e 70 75 74 |Samples |to input|
|00000150| 20 5b 66 6f 6c 64 65 72 | 5d 0d 20 20 20 20 20 20 | [folder|].      |
|00000160| 20 20 20 45 75 47 65 6e | 65 20 49 6e 70 75 74 20 |   EuGen|e Input |
|00000170| 5b 53 61 6d 70 6c 65 20 | 44 61 74 61 20 23 31 20 |[Sample |Data #1 |
|00000180| 37 4b 5d 0d 20 20 20 20 | 20 20 20 20 20 50 68 79 |7K].    |     Phy|
|00000190| 6c 69 70 2e 72 65 73 75 | 6c 74 20 49 6e 70 75 74 |lip.resu|lt Input|
|000001a0| 20 5b 53 61 6d 70 6c 65 | 20 44 61 74 61 20 23 32 | [Sample| Data #2|
|000001b0| 20 31 34 4b 5d 0d 20 20 | 20 20 20 20 53 61 6d 70 | 14K].  |    Samp|
|000001c0| 6c 65 20 6f 75 74 70 75 | 74 20 66 69 6c 65 73 20 |le outpu|t files |
|000001d0| 5b 66 6f 6c 64 65 72 5d | 0d 20 20 20 20 20 20 20 |[folder]|.       |
|000001e0| 20 20 45 75 47 65 6e 65 | 20 53 74 72 69 6e 67 20 |  EuGene| String |
|000001f0| 4f 75 74 70 75 74 20 5b | 53 61 6d 70 6c 65 20 44 |Output [|Sample D|
|00000200| 61 74 61 20 23 33 20 34 | 4b 5d 0d 20 20 20 20 20 |ata #3 4|K].     |
|00000210| 20 20 20 20 50 61 75 70 | 20 4f 75 74 70 75 74 20 |    Paup| Output |
|00000220| 5b 53 61 6d 70 6c 65 20 | 44 61 74 61 20 23 34 20 |[Sample |Data #4 |
|00000230| 37 4b 5d 0d 20 20 20 20 | 20 20 20 20 20 48 65 6e |7K].    |     Hen|
|00000240| 6e 69 67 38 36 20 4f 75 | 74 70 75 74 20 5b 53 61 |nig86 Ou|tput [Sa|
|00000250| 6d 70 6c 65 20 44 61 74 | 61 20 23 35 20 34 4b 5d |mple Dat|a #5 4K]|
|00000260| 0d 20 20 20 20 20 20 20 | 20 20 50 68 79 6c 69 70 |.       |  Phylip|
|00000270| 20 4f 75 74 70 75 74 20 | 5b 53 61 6d 70 6c 65 20 | Output |[Sample |
|00000280| 44 61 74 61 20 23 36 20 | 34 4b 5d 0d 20 20 20 53 |Data #6 |4K].   S|
|00000290| 74 75 72 67 65 6f 6e 20 | 43 79 74 42 20 5b 66 6f |turgeon |CytB [fo|
|000002a0| 6c 64 65 72 5d 0d 20 20 | 20 20 20 20 20 20 20 47 |lder].  |       G|
|000002b0| 65 6e 42 61 6e 6b 20 46 | 6f 72 6d 61 74 20 49 6e |enBank F|ormat In|
|000002c0| 70 75 74 20 5b 53 61 6d | 70 6c 65 20 44 61 74 61 |put [Sam|ple Data|
|000002d0| 20 23 37 20 34 4b 5d 0d | 20 20 20 20 20 20 20 20 | #7 4K].|        |
|000002e0| 20 4e 75 63 6c 65 6f 74 | 69 64 65 20 53 74 72 69 | Nucleot|ide Stri|
|000002f0| 6e 67 20 4f 75 74 70 75 | 74 20 5b 53 61 6d 70 6c |ng Outpu|t [Sampl|
|00000300| 65 20 44 61 74 61 20 23 | 38 20 34 4b 5d 0d 20 20 |e Data #|8 4K].  |
|00000310| 20 20 20 20 20 20 20 50 | 65 70 74 69 64 65 20 53 |       P|eptide S|
|00000320| 74 72 69 6e 67 20 4f 75 | 74 70 75 74 20 5b 53 61 |tring Ou|tput [Sa|
|00000330| 6d 70 6c 65 20 44 61 74 | 61 20 23 39 20 34 4b 5d |mple Dat|a #9 4K]|
|00000340| 0d 20 20 20 20 20 20 20 | 20 20 52 65 61 64 69 6e |.       |  Readin|
|00000350| 67 20 46 72 61 6d 65 20 | 4f 75 74 70 75 74 20 5b |g Frame |Output [|
|00000360| 53 61 6d 70 6c 65 20 44 | 61 74 61 20 23 31 30 20 |Sample D|ata #10 |
|00000370| 37 4b 5d 0d 20 20 20 41 | 62 6f 75 74 20 53 61 6d |7K].   A|bout Sam|
|00000380| 70 6c 65 20 44 61 74 61 | 20 5b 68 65 6c 70 20 74 |ple Data| [help t|
|00000390| 65 78 74 20 32 30 4b 5d | 0d 20 20 20 56 65 72 73 |ext 20K]|.   Vers|
|000003a0| 69 6f 6e 20 48 69 73 74 | 6f 72 79 20 5b 68 65 6c |ion Hist|ory [hel|
|000003b0| 70 20 74 65 78 74 20 33 | 39 4b 5d 0d 53 65 71 75 |p text 3|9K].Sequ|
|000003c0| 65 6e 63 65 73 20 5b 66 | 6f 6c 64 65 72 20 2d 2d |ences [f|older --|
|000003d0| 20 64 6f 20 6e 6f 74 20 | 63 68 61 6e 67 65 20 6e | do not |change n|
|000003e0| 61 6d 65 20 6f 72 20 64 | 69 72 65 63 74 6f 72 79 |ame or d|irectory|
|000003f0| 5d 0d 20 20 20 42 54 41 | 4d 54 43 47 20 5b 63 6f |].   BTA|MTCG [co|
|00000400| 77 20 6d 74 44 4e 41 20 | 32 31 4b 5d 0d 20 20 20 |w mtDNA |21K].   |
|00000410| 44 59 41 4d 54 43 47 20 | 5b 44 72 6f 73 6f 70 68 |DYAMTCG |[Drosoph|
|00000420| 69 6c 61 20 6d 74 44 4e | 41 20 32 31 4b 5d 0d 20 |ila mtDN|A 21K]. |
|00000430| 20 20 47 47 01 41 4d 54 | 43 47 20 5b 63 68 69 63 |  GG.AMT|CG [chic|
|00000440| 6b 65 6e 20 6d 74 44 4e | 41 20 31 38 4b 5d 0d 20 |ken mtDN|A 18K]. |
|00000450| 20 20 48 53 41 4d 54 43 | 47 20 5b 68 75 6d 61 6e |  HSAMTC|G [human|
|00000460| 20 6d 74 44 4e 41 20 32 | 31 4b 5d 0d 20 20 20 4d | mtDNA 2|1K].   M|
|00000470| 4d 55 4d 54 43 47 20 5b | 6d 6f 75 73 65 20 6d 74 |MUMTCG [|mouse mt|
|00000480| 44 4e 41 20 32 31 4b 5d | 0d 20 20 20 50 41 55 4d |DNA 21K]|.   PAUM|
|00000490| 54 43 47 20 5b 50 61 72 | 61 6d 65 63 69 75 6d 20 |TCG [Par|amecium |
|000004a0| 6d 74 44 4e 41 20 34 32 | 4b 5d 0d 20 20 20 50 4c |mtDNA 42|K].   PL|
|000004b0| 49 4d 54 43 47 20 5b 55 | 72 63 68 69 6e 20 2d 20 |IMTCG [U|rchin - |
|000004c0| 50 61 72 61 63 65 6e 74 | 72 6f 74 75 73 20 6d 74 |Paracent|rotus mt|
|000004d0| 44 4e 41 20 32 31 4b 5d | 0d 20 20 20 52 4e 4f 4d |DNA 21K]|.   RNOM|
|000004e0| 54 43 47 20 5b 52 61 74 | 20 6d 74 44 4e 41 20 32 |TCG [Rat| mtDNA 2|
|000004f0| 31 4b 5d 0d 20 20 20 53 | 50 4f 4d 54 43 47 20 5b |1K].   S|POMTCG [|
|00000500| 79 65 61 73 74 20 6d 74 | 44 4e 41 20 32 35 4b 5d |yeast mt|DNA 25K]|
|00000510| 0d 20 20 20 53 50 55 4d | 54 43 47 20 5b 55 72 63 |.   SPUM|TCG [Urc|
|00000520| 68 69 6e 20 2d 20 53 74 | 72 6f 6e 67 79 6c 6f 63 |hin - St|rongyloc|
|00000530| 65 6e 74 72 6f 74 75 73 | 20 6d 74 44 4e 41 20 32 |entrotus| mtDNA 2|
|00000540| 31 4b 5d 0d 20 20 20 58 | 4c 41 4d 54 43 47 20 5b |1K].   X|LAMTCG [|
|00000550| 66 72 6f 67 20 6d 74 44 | 4e 41 20 32 31 4b 5d 0d |frog mtD|NA 21K].|
|00000560| 20 20 20 4d 50 4f 43 50 | 43 47 20 5b 6c 69 76 65 |   MPOCP|CG [live|
|00000570| 72 77 6f 72 74 20 63 70 | 44 4e 41 20 2d 20 50 72 |rwort cp|DNA - Pr|
|00000580| 6f 76 69 64 65 64 20 75 | 70 6f 6e 20 72 65 71 75 |ovided u|pon requ|
|00000590| 65 73 74 20 31 31 39 4b | 5d 0d 20 20 20 4e 54 41 |est 119K|].   NTA|
|000005a0| 43 50 43 47 20 5b 74 6f | 62 61 63 63 6f 20 63 70 |CPCG [to|bacco cp|
|000005b0| 44 4e 41 20 2d 20 50 72 | 6f 76 69 64 65 64 20 75 |DNA - Pr|ovided u|
|000005c0| 70 6f 6e 20 72 65 71 75 | 65 73 74 20 31 35 38 4b |pon requ|est 158K|
|000005d0| 5d 0d 20 20 20 4f 53 41 | 43 50 43 47 20 5b 72 69 |].   OSA|CPCG [ri|
|000005e0| 63 65 20 63 70 44 4e 41 | 20 2d 20 50 72 6f 76 69 |ce cpDNA| - Provi|
|000005f0| 64 65 64 20 75 70 6f 6e | 20 72 65 71 75 65 73 74 |ded upon| request|
|00000600| 20 31 33 33 4b 5d 0d 53 | 65 71 75 65 6e 63 65 20 | 133K].S|equence |
|00000610| 53 70 65 61 6b 65 72 20 | 5b 73 74 61 63 6b 20 2d |Speaker |[stack -|
|00000620| 20 50 72 6f 76 69 64 65 | 64 20 75 70 6f 6e 20 72 | Provide|d upon r|
|00000630| 65 71 75 65 73 74 20 31 | 36 31 4b 5d 0d 43 6f 64 |equest 1|61K].Cod|
|00000640| 6f 6e 20 55 73 61 67 65 | 20 5b 45 78 63 65 6c 20 |on Usage| [Excel |
|00000650| 66 6f 72 6d 61 74 20 6d | 61 74 72 69 78 20 31 30 |format m|atrix 10|
|00000660| 39 4b 5d 0d 0d 45 76 65 | 72 79 74 68 69 6e 67 20 |9K]..Eve|rything |
|00000670| 65 78 63 65 70 74 20 66 | 69 6c 65 73 20 6c 69 73 |except f|iles lis|
|00000680| 74 65 64 20 61 73 20 22 | 50 72 6f 76 69 64 65 64 |ted as "|Provided|
|00000690| 20 75 70 6f 6e 20 72 65 | 71 75 65 73 74 22 20 61 | upon re|quest" a|
|000006a0| 72 65 20 64 69 73 74 72 | 69 62 75 74 65 64 20 69 |re distr|ibuted i|
|000006b0| 6e 20 0d 63 6f 6d 70 72 | 65 73 73 65 64 20 66 6f |n .compr|essed fo|
|000006c0| 72 6d 20 61 73 20 61 20 | 73 65 6c 66 2d 65 78 74 |rm as a |self-ext|
|000006d0| 72 61 63 74 69 6e 67 20 | 61 72 63 68 69 76 65 20 |racting |archive |
|000006e0| 28 43 6f 6d 70 61 63 74 | 20 50 72 6f 29 0d 0d 0d |(Compact| Pro)...|
|000006f0| 20 20 20 20 20 20 20 20 | 20 20 20 20 20 20 20 20 |        |        |
|00000700| 20 20 41 62 6f 75 74 20 | 53 61 6d 70 6c 65 20 49 |  About |Sample I|
|00000710| 6e 70 75 74 2f 4f 75 74 | 70 75 74 20 44 61 74 61 |nput/Out|put Data|
|00000720| 0d 0d 54 6f 20 66 61 63 | 69 6c 69 74 61 74 65 20 |..To fac|ilitate |
|00000730| 61 20 66 69 72 73 74 2d | 74 69 6d 65 20 75 73 65 |a first-|time use|
|00000740| 72 27 73 20 65 78 70 65 | 72 69 65 6e 63 65 20 77 |r's expe|rience w|
|00000750| 69 74 68 20 44 4e 41 20 | 54 72 61 6e 73 6c 61 74 |ith DNA |Translat|
|00000760| 6f 72 2c 20 49 20 68 61 | 76 65 0d 70 72 6f 76 69 |or, I ha|ve.provi|
|00000770| 64 65 64 20 74 77 6f 20 | 73 65 74 73 20 6f 66 20 |ded two |sets of |
|00000780| 73 61 6d 70 6c 65 20 64 | 61 74 61 2e 20 54 68 65 |sample d|ata. The|
|00000790| 20 66 69 72 73 74 2c 20 | 61 20 70 6f 72 74 69 6f | first, |a portio|
|000007a0| 6e 20 6f 66 20 73 6d 61 | 6c 6c 20 28 31 32 53 29 |n of sma|ll (12S)|
|000007b0| 0d 72 52 4e 41 2d 65 6e | 63 6f 64 69 6e 67 20 67 |.rRNA-en|coding g|
|000007c0| 65 6e 65 20 66 6f 72 20 | 66 6f 75 72 20 76 65 72 |ene for |four ver|
|000007d0| 74 65 62 72 61 74 65 73 | 20 61 6e 64 20 6f 6e 65 |tebrates| and one|
|000007e0| 20 75 72 63 68 69 6e 2c | 20 63 6f 6e 74 61 69 6e | urchin,| contain|
|000007f0| 73 20 73 61 6d 70 6c 65 | 20 61 6c 69 67 6e 65 64 |s sample| aligned|
|00000800| 0d 64 61 74 61 20 66 72 | 6f 6d 20 45 75 47 65 6e |.data fr|om EuGen|
|00000810| 65 20 28 22 45 75 47 65 | 6e 65 20 49 6e 70 75 74 |e ("EuGe|ne Input|
|00000820| 22 29 20 5b 53 44 20 23 | 31 5d 2c 20 77 68 69 63 |") [SD #|1], whic|
|00000830| 68 20 63 61 6e 20 62 65 | 20 64 69 72 65 63 74 6c |h can be| directl|
|00000840| 79 20 63 6f 6e 76 65 72 | 74 65 64 20 74 6f 0d 4e |y conver|ted to.N|
|00000850| 65 78 75 73 20 28 50 41 | 55 50 29 20 5b 53 44 20 |exus (PA|UP) [SD |
|00000860| 23 33 5d 20 6f 72 20 73 | 74 72 69 6e 67 20 66 6f |#3] or s|tring fo|
|00000870| 72 6d 61 74 73 20 5b 53 | 44 20 23 34 5d 20 62 79 |rmats [S|D #4] by|
|00000880| 20 73 65 6c 65 63 74 69 | 6e 67 20 22 41 6c 69 67 | selecti|ng "Alig|
|00000890| 6e 65 64 20 4e 75 63 6c | 65 6f 74 69 64 65 73 2e |ned Nucl|eotides.|
|000008a0| 2e 2e 22 20 0d 66 72 6f | 6d 20 74 68 65 20 43 6f |.." .fro|m the Co|
|000008b0| 6e 76 65 72 74 20 4d 65 | 6e 75 20 61 6e 64 20 62 |nvert Me|nu and b|
|000008c0| 79 20 63 6c 69 63 6b 69 | 6e 67 20 6f 6e 20 74 68 |y clicki|ng on th|
|000008d0| 65 20 63 6f 72 72 65 73 | 70 6f 6e 64 69 6e 67 20 |e corres|ponding |
|000008e0| 6f 70 74 69 6f 6e 20 69 | 6e 20 74 68 65 20 72 65 |option i|n the re|
|000008f0| 73 75 6c 74 69 6e 67 0d | 64 69 61 6c 6f 67 20 62 |sulting.|dialog b|
|00000900| 6f 78 2e 20 54 68 65 20 | 73 74 72 69 6e 67 20 6f |ox. The |string o|
|00000910| 75 74 70 75 74 20 66 69 | 6c 65 20 5b 53 44 20 23 |utput fi|le [SD #|
|00000920| 33 5d 20 69 73 20 61 6c | 73 6f 20 73 75 69 74 61 |3] is al|so suita|
|00000930| 62 6c 65 20 61 73 20 61 | 6e 20 69 6e 70 75 74 20 |ble as a|n input |
|00000940| 66 69 6c 65 20 66 6f 72 | 20 0d 61 6e 79 20 6f 66 |file for| .any of|
|00000950| 20 74 68 65 20 63 6f 6e | 76 65 72 73 69 6f 6e 73 | the con|versions|
|00000960| 20 69 6e 20 74 68 65 20 | 64 69 61 6c 6f 67 20 62 | in the |dialog b|
|00000970| 6f 78 20 72 65 73 75 6c | 74 69 6e 67 20 66 72 6f |ox resul|ting fro|
|00000980| 6d 20 73 65 6c 65 63 74 | 69 6e 67 20 22 53 74 72 |m select|ing "Str|
|00000990| 69 6e 67 20 0d 4e 75 63 | 6c 65 6f 74 69 64 65 73 |ing .Nuc|leotides|
|000009a0| 2e 2e 2e 22 20 66 72 6f | 6d 20 74 68 65 20 43 6f |..." fro|m the Co|
|000009b0| 76 65 72 74 20 6d 65 6e | 75 2c 20 6f 72 20 22 49 |vert men|u, or "I|
|000009c0| 6d 70 6f 72 74 20 4d 75 | 6c 74 69 70 6c 65 22 20 |mport Mu|ltiple" |
|000009d0| 66 72 6f 6d 20 74 68 65 | 20 46 69 6c 65 20 6d 65 |from the| File me|
|000009e0| 6e 75 20 6f 66 0d 74 68 | 65 20 41 6c 69 67 6e 65 |nu of.th|e Aligne|
|000009f0| 72 20 73 74 61 63 6b 2e | 20 54 68 65 20 50 41 55 |r stack.| The PAU|
|00000a00| 50 20 6f 75 74 70 75 74 | 20 66 69 6c 65 20 5b 53 |P output| file [S|
|00000a10| 44 20 23 34 5d 20 6c 69 | 6b 65 77 69 73 65 20 63 |D #4] li|kewise c|
|00000a20| 61 6e 20 62 65 20 75 73 | 65 64 20 61 73 20 73 61 |an be us|ed as sa|
|00000a30| 6d 70 6c 65 20 69 6e 70 | 75 74 20 0d 74 6f 20 74 |mple inp|ut .to t|
|00000a40| 65 73 74 20 63 6f 6e 76 | 65 72 73 69 6f 6e 20 6f |est conv|ersion o|
|00000a50| 66 20 4e 65 78 75 73 20 | 66 6f 72 6d 61 74 20 74 |f Nexus |format t|
|00000a60| 6f 20 65 69 74 68 65 72 | 20 22 48 65 6e 6e 69 67 |o either| "Hennig|
|00000a70| 38 36 20 4f 75 74 70 75 | 74 22 20 5b 53 44 20 23 |86 Outpu|t" [SD #|
|00000a80| 35 5d 20 6f 72 20 0d 22 | 50 68 79 6c 69 70 20 4f |5] or ."|Phylip O|
|00000a90| 75 74 70 75 74 22 20 5b | 53 44 20 23 36 5d 20 62 |utput" [|SD #6] b|
|00000aa0| 79 20 73 65 6c 65 63 74 | 69 6e 67 20 22 4e 65 78 |y select|ing "Nex|
|00000ab0| 75 73 20 4e 75 63 6c 65 | 6f 74 69 64 65 73 2e 2e |us Nucle|otides..|
|00000ac0| 2e 22 20 66 72 6f 6d 20 | 74 68 65 20 43 6f 6e 76 |." from |the Conv|
|00000ad0| 65 72 74 20 6d 65 6e 75 | 2e 20 0d 54 68 65 73 65 |ert menu|. .These|
|00000ae0| 20 64 61 74 61 20 66 69 | 6c 65 73 20 73 68 6f 75 | data fi|les shou|
|00000af0| 6c 64 20 62 65 20 72 65 | 61 64 79 2d 74 6f 2d 75 |ld be re|ady-to-u|
|00000b00| 73 65 20 66 6f 72 20 61 | 6e 61 6c 79 73 69 73 20 |se for a|nalysis |
|00000b10| 62 79 20 74 68 6f 73 65 | 20 70 72 6f 67 72 61 6d |by those| program|
|00000b20| 73 2e 20 49 66 20 79 6f | 75 20 0d 61 6e 61 6c 79 |s. If yo|u .analy|
|00000b30| 7a 65 20 74 68 65 20 22 | 50 68 79 6c 69 70 20 4f |ze the "|Phylip O|
|00000b40| 75 74 70 75 74 22 20 66 | 69 6c 65 20 5b 53 44 20 |utput" f|ile [SD |
|00000b50| 23 36 5d 20 77 69 74 68 | 20 50 48 59 4c 49 50 20 |#6] with| PHYLIP |
|00000b60| 33 2e 33 2c 20 50 68 79 | 6c 69 70 20 77 69 6c 6c |3.3, Phy|lip will|
|00000b70| 20 6f 75 74 70 75 74 20 | 61 20 0d 66 69 6c 65 20 | output |a .file |
|00000b80| 77 68 69 63 68 20 73 68 | 6f 75 6c 64 20 72 65 73 |which sh|ould res|
|00000b90| 65 6d 62 6c 65 20 22 50 | 68 79 6c 69 70 2e 72 65 |emble "P|hylip.re|
|00000ba0| 73 75 6c 74 20 49 6e 70 | 75 74 22 20 5b 53 44 20 |sult Inp|ut" [SD |
|00000bb0| 23 32 5d 20 77 68 69 63 | 68 20 63 6f 75 6c 64 20 |#2] whic|h could |
|00000bc0| 74 68 65 6e 20 62 65 20 | 0d 72 65 63 6f 6e 76 65 |then be |.reconve|
|00000bd0| 72 74 65 64 20 74 6f 20 | 73 74 72 69 6e 67 20 5b |rted to |string [|
|00000be0| 53 44 20 23 33 5d 2c 20 | 50 41 55 50 20 5b 53 44 |SD #3], |PAUP [SD|
|00000bf0| 20 23 34 5d 20 6f 72 20 | 48 65 6e 6e 69 67 38 36 | #4] or |Hennig86|
|00000c00| 20 5b 53 44 20 23 35 5d | 20 66 6f 72 6d 61 74 73 | [SD #5]| formats|
|00000c10| 2e 0d 0d 54 68 65 20 73 | 65 63 6f 6e 64 20 66 6f |...The s|econd fo|
|00000c20| 6c 64 65 72 20 63 6f 6e | 74 61 69 6e 73 20 61 20 |lder con|tains a |
|00000c30| 73 69 6e 67 6c 65 20 47 | 65 6e 42 61 6e 6b aa 20 |single G|enBank. |
|00000c40| 73 65 71 75 65 6e 63 65 | 20 28 22 47 65 6e 42 61 |sequence| ("GenBa|
|00000c50| 6e 6b 20 46 6f 72 6d 61 | 74 20 49 6e 70 75 74 22 |nk Forma|t Input"|
|00000c60| 29 20 0d 5b 53 44 20 23 | 37 5d 20 73 61 76 65 64 |) .[SD #|7] saved|
|00000c70| 20 62 79 20 73 63 72 65 | 65 6e 20 63 61 70 74 75 | by scre|en captu|
|00000c80| 72 65 20 61 73 20 69 74 | 20 61 70 70 65 61 72 65 |re as it| appeare|
|00000c90| 64 20 6f 6e 20 74 68 65 | 20 73 63 72 65 65 6e 20 |d on the| screen |
|00000ca0| 77 68 69 6c 65 20 6c 6f | 67 67 65 64 20 6f 6e 74 |while lo|gged ont|
|00000cb0| 6f 20 74 68 65 20 0d 57 | 69 73 63 6f 6e 73 69 6e |o the .W|isconsin|
|00000cc0| 20 47 43 47 20 70 61 63 | 6b 61 67 65 20 76 69 61 | GCG pac|kage via|
|00000cd0| 20 72 65 6d 6f 74 65 20 | 74 65 72 6d 69 6e 61 6c | remote |terminal|
|00000ce0| 2e 20 53 65 6c 65 63 74 | 20 22 4e 75 63 6c 65 6f |. Select| "Nucleo|
|00000cf0| 74 69 64 65 20 53 74 72 | 69 6e 67 73 2e 2e 2e 22 |tide Str|ings..."|
|00000d00| 20 66 72 6f 6d 20 74 68 | 65 20 0d 43 6f 6e 76 65 | from th|e .Conve|
|00000d10| 72 74 20 4d 65 6e 75 20 | 61 6e 64 20 73 65 6c 65 |rt Menu |and sele|
|00000d20| 63 74 20 74 68 65 20 72 | 61 64 69 6f 20 62 75 74 |ct the r|adio but|
|00000d30| 74 6f 6e 20 66 6f 72 20 | 63 6f 6e 76 65 72 74 69 |ton for |converti|
|00000d40| 6e 67 20 61 20 47 65 6e | 42 61 6e 6b 20 66 6f 72 |ng a Gen|Bank for|
|00000d50| 6d 61 74 74 65 64 20 66 | 69 6c 65 20 0d 74 6f 20 |matted f|ile .to |
|00000d60| 61 20 73 74 72 69 6e 67 | 20 73 65 71 75 65 6e 63 |a string| sequenc|
|00000d70| 65 20 28 22 4e 75 63 6c | 65 6f 74 69 64 65 20 53 |e ("Nucl|eotide S|
|00000d80| 74 72 69 6e 67 20 4f 75 | 74 70 75 74 22 29 20 5b |tring Ou|tput") [|
|00000d90| 53 44 20 23 38 5d 2c 20 | 77 68 69 63 68 20 63 61 |SD #8], |which ca|
|00000da0| 6e 20 74 68 65 6e 20 62 | 65 20 0d 74 72 61 6e 73 |n then b|e .trans|
|00000db0| 6c 61 74 65 64 20 69 6e | 74 6f 20 66 6f 72 6d 61 |lated in|to forma|
|00000dc0| 74 74 65 64 20 72 65 61 | 64 69 6e 67 20 66 72 61 |tted rea|ding fra|
|00000dd0| 6d 65 28 73 29 20 61 73 | 20 69 6e 20 22 52 65 61 |me(s) as| in "Rea|
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|00002910| 00 01 00 00 00 15 8f 00 | 00 14 8f 00 00 01 1d 00 |........|........|
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+--------+-------------------------+-------------------------+--------+--------+